PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G194500.1
Common NameB456_006G194500, LOC105800083
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 284aa    MW: 31991.7 Da    PI: 6.8773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G194500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08167214455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Gorai.006G194500.1 167 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 214
                         8*************************9....35599999*********9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.12E-9161218No hitNo description
SuperFamilySSF474594.71E-16161231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.951163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15164225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-5167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MADFTTDMQN FKQSFSFMDI DPATMESPLN QYGGELNQSV IDNSALNFQT FFPFSNETFF  60
SNQVAEIAGN CRANPPSYFH DSNHKGSITA LSVAHSSFVT SRNEFHDSNK RKSLDLSESS  120
YGNSSSPWIK RINNLGRGKR AKSNEKGENK PKDVVHVRAR RGEATDSHSL AERVRRGKIN  180
ERLRCLQDIV PGCYKTMGMA VMLDEIINYV QSLQNQVEFL SMKLTAASTY YDFNSDTDAV  240
ERMQVLPREK AQGAKDELDK FMREGDVERL ACFHSSTIWS SLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486440.10.0PREDICTED: transcription factor BEE 3-like isoform X1
SwissprotQ8GWK71e-59BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0D2S6B00.0A0A0D2S6B0_G
STRINGPOPTR_0012s05210.11e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.22e-62BR enhanced expression 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]